Variant report

Variant	rs74093493
Chromosome Location	chr13:67809608-67809609
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10161765	0.88[AFR][1000 genomes]
rs12323131	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2031863	0.88[AFR][1000 genomes]
rs3013561	1.00[EUR][1000 genomes]
rs3812858	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56400607	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093462	0.83[AFR][1000 genomes]
rs74093468	0.88[AFR][1000 genomes]
rs74095115	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9317647	0.83[AFR][1000 genomes]
rs9592505	0.95[EUR][1000 genomes]
rs9599200	0.88[AFR][1000 genomes]
rs9599201	0.88[AFR][1000 genomes]
rs9599208	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67801200-67810000	Active TSS	Right Atrium	heart
2	chr13:67804400-67811400	Active TSS	Stomach Smooth Muscle	stomach
3	chr13:67805600-67810400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr13:67805800-67811200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:67807200-67810800	Weak transcription	Brain Substantia Nigra	brain
6	chr13:67807400-67810200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr13:67807600-67811000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:67809400-67809800	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr13:67809400-67809800	Flanking Active TSS	A549	lung
10	chr13:67809400-67810000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr13:67809600-67809800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr13:67809600-67810000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr13:67809600-67812800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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