Variant report

Variant	rs56400607
Chromosome Location	chr13:67833773-67833774
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12323131	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3013561	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3812858	0.95[EUR][1000 genomes]
rs74093493	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74095115	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9592505	0.95[EUR][1000 genomes]
rs9599208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv562140	chr13:67820503-67858550	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67831800-67833800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr13:67831800-67834000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:67831800-67834400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr13:67832000-67833800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:67832000-67834400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr13:67832600-67834400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr13:67832600-67834600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:67833200-67833800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr13:67833600-67834000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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