Variant report
| Variant | rs9592505 |
|---|---|
| Chromosome Location | chr13:67812676-67812677 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:67811680..67814191-chr13:67815076..67817886,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs12323131 | 0.91[EUR][1000 genomes] |
| rs3013561 | 0.95[EUR][1000 genomes] |
| rs3812858 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56400607 | 0.95[EUR][1000 genomes] |
| rs60699671 | 1.00[ASN][1000 genomes] |
| rs73511412 | 1.00[ASN][1000 genomes] |
| rs73511438 | 1.00[ASN][1000 genomes] |
| rs73511443 | 1.00[ASN][1000 genomes] |
| rs73511445 | 1.00[ASN][1000 genomes] |
| rs73511447 | 1.00[ASN][1000 genomes] |
| rs74093482 | 1.00[ASN][1000 genomes] |
| rs74093493 | 0.95[EUR][1000 genomes] |
| rs74095115 | 0.95[EUR][1000 genomes] |
| rs9317648 | 1.00[ASN][1000 genomes] |
| rs9317649 | 1.00[ASN][1000 genomes] |
| rs9599198 | 1.00[ASN][1000 genomes] |
| rs9599199 | 0.83[ASN][1000 genomes] |
| rs9599208 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1035741 | chr13:67212973-68077950 | Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv541817 | chr13:67212973-68077950 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:67809600-67812800 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
