Variant report

Variant	rs9317649
Chromosome Location	chr13:67774115-67774116
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17592228	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs2031863	1.00[CEU][hapmap]
rs3812858	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs60699671	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511412	1.00[ASN][1000 genomes]
rs73511438	1.00[ASN][1000 genomes]
rs73511443	1.00[ASN][1000 genomes]
rs73511445	1.00[ASN][1000 genomes]
rs73511447	1.00[ASN][1000 genomes]
rs74093482	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9317647	1.00[CEU][hapmap]
rs9317648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9592502	1.00[CEU][hapmap]
rs9592505	1.00[ASN][1000 genomes]
rs9599196	1.00[CEU][hapmap]
rs9599198	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9599199	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9599200	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67731400-67795400	Weak transcription	Primary B cells from cord blood	blood
2	chr13:67750600-67780800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:67756200-67795800	Weak transcription	Left Ventricle	heart
4	chr13:67765600-67774400	Weak transcription	Brain Angular Gyrus	brain
5	chr13:67767000-67783000	Weak transcription	HSMM	muscle
6	chr13:67772200-67797200	Weak transcription	Fetal Kidney	kidney
7	chr13:67773600-67775200	Active TSS	A549	lung
8	chr13:67773800-67775000	Enhancers	Brain Anterior Caudate	brain
9	chr13:67773800-67775000	Enhancers	Brain Cingulate Gyrus	brain
10	chr13:67773800-67775000	Enhancers	Brain Substantia Nigra	brain
11	chr13:67774000-67775000	Enhancers	Brain Hippocampus Middle	brain
12	chr13:67774000-67775000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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