Variant report

Variant	rs73511445
Chromosome Location	chr13:67832495-67832496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3812858	1.00[ASN][1000 genomes]
rs60699671	1.00[ASN][1000 genomes]
rs73511412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511438	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74093482	1.00[ASN][1000 genomes]
rs9317648	1.00[ASN][1000 genomes]
rs9317649	1.00[ASN][1000 genomes]
rs9592505	1.00[ASN][1000 genomes]
rs9599198	1.00[ASN][1000 genomes]
rs9599199	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv562140	chr13:67820503-67858550	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67825400-67833600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:67828200-67832600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:67831800-67833800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:67831800-67834000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr13:67831800-67834400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr13:67832000-67833000	Enhancers	HSMM	muscle
7	chr13:67832000-67833800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:67832000-67834400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr13:67832200-67833600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:67832400-67832800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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