Variant report

Variant	rs9599196
Chromosome Location	chr13:67760402-67760403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10161765	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17592228	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2031863	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093462	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093468	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093470	1.00[EUR][1000 genomes]
rs9317647	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9317648	1.00[CEU][hapmap]
rs9317649	1.00[CEU][hapmap]
rs9592502	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9599200	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9599201	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9652228	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv977353	chr13:67759431-67764616	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67731400-67795400	Weak transcription	Primary B cells from cord blood	blood
2	chr13:67750600-67780800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:67751200-67761200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr13:67752000-67761000	Weak transcription	Brain Anterior Caudate	brain
5	chr13:67756200-67761200	Weak transcription	Brain Substantia Nigra	brain
6	chr13:67756200-67795800	Weak transcription	Left Ventricle	heart
7	chr13:67756400-67761200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr13:67756800-67760600	Weak transcription	Brain Angular Gyrus	brain
9	chr13:67758800-67765800	Weak transcription	Aorta	Aorta
10	chr13:67759000-67761200	Weak transcription	Stomach Mucosa	stomach
11	chr13:67759200-67761200	Weak transcription	Brain Hippocampus Middle	brain
12	chr13:67759400-67760600	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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