Variant report

Variant	rs74093470
Chromosome Location	chr13:67782397-67782398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10161765	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17592228	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2031863	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60699671	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs74093462	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093468	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093482	0.92[AFR][1000 genomes]
rs9317647	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9592502	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9599196	1.00[EUR][1000 genomes]
rs9599198	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9599199	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9599200	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9599201	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9652228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67731400-67795400	Weak transcription	Primary B cells from cord blood	blood
2	chr13:67756200-67795800	Weak transcription	Left Ventricle	heart
3	chr13:67767000-67783000	Weak transcription	HSMM	muscle
4	chr13:67772200-67797200	Weak transcription	Fetal Kidney	kidney
5	chr13:67775000-67783000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr13:67779400-67791000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr13:67780000-67783200	Weak transcription	Brain Anterior Caudate	brain
8	chr13:67780000-67787600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:67780200-67791400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr13:67781000-67784800	Enhancers	Brain Angular Gyrus	brain
11	chr13:67781400-67783000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr13:67781400-67784000	Enhancers	Brain Substantia Nigra	brain
13	chr13:67781400-67784400	Enhancers	Brain Cingulate Gyrus	brain
14	chr13:67781600-67784600	Enhancers	A549	lung
15	chr13:67781800-67782800	Weak transcription	Brain Hippocampus Middle	brain
16	chr13:67782000-67783000	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links