Variant report

Variant	rs9599201
Chromosome Location	chr13:67791125-67791126
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67780012..67782113-chr13:67789906..67791618,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10161765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17592228	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2031863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093462	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093470	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74093493	0.88[AFR][1000 genomes]
rs9317647	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9592502	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9599196	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9599200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9652228	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv976243	chr13:67790232-67794102	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67731400-67795400	Weak transcription	Primary B cells from cord blood	blood
2	chr13:67756200-67795800	Weak transcription	Left Ventricle	heart
3	chr13:67772200-67797200	Weak transcription	Fetal Kidney	kidney
4	chr13:67780200-67791400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr13:67783800-67795200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr13:67784600-67792000	Weak transcription	A549	lung
7	chr13:67789600-67791800	Enhancers	Brain Cingulate Gyrus	brain
8	chr13:67789600-67794400	Enhancers	Brain Substantia Nigra	brain
9	chr13:67790000-67795000	Enhancers	Brain Angular Gyrus	brain
10	chr13:67790200-67791800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr13:67790400-67792600	Weak transcription	HSMM	muscle
12	chr13:67790800-67791800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr13:67790800-67795800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr13:67791000-67791400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:67791000-67791400	Active TSS	Brain Hippocampus Middle	brain
16	chr13:67791000-67791600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr13:67791000-67791800	Enhancers	Brain Anterior Caudate	brain
18	chr13:67791000-67792000	Enhancers	Fetal Brain Female	brain
19	chr13:67791000-67792200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr13:67791000-67792400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr13:67791000-67793000	Enhancers	Brain Germinal Matrix	brain
22	chr13:67791000-67793600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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