Variant report

Variant	rs3026047
Chromosome Location	chr10:118984464-118984465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11197932	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2283137	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363332	0.85[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs363334	0.85[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363337	0.85[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs363341	0.81[CEU][hapmap];0.83[TSI][hapmap]
rs363371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs363390	0.85[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs363399	0.85[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs363404	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4081624	0.82[EUR][1000 genomes]
rs60543597	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	esv1812234	chr10:118977123-119004095	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3026047	WDR11	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118981200-118984600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:118981600-118987200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr10:118983200-118986200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:118983200-118986600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr10:118983400-118985000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:118983800-118985200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:118984400-118984600	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:118984400-118984600	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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