Variant report

Variant	rs363337
Chromosome Location	chr10:119008485-119008486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11197932	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2283137	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3026047	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs363332	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs363334	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs363338	0.82[CEU][hapmap]
rs363340	0.81[EUR][1000 genomes]
rs363341	0.95[CEU][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs363371	0.85[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs363399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs363404	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4081624	0.83[EUR][1000 genomes]
rs60543597	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs363337	C10orf119	cis	parietal	SCAN
rs363337	WDR11	cis	cerebellum	SCAN
rs363337	C10orf82	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119001600-119010200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:119001600-119013400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:119001800-119011800	Weak transcription	Ovary	ovary
4	chr10:119007400-119008600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr10:119007400-119008600	Enhancers	Thymus	Thymus
6	chr10:119007800-119009800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:119008000-119009000	Flanking Active TSS	Primary T cells from cord blood	blood
8	chr10:119008000-119009600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:119008200-119008600	Enhancers	Brain Germinal Matrix	brain
10	chr10:119008200-119008600	Flanking Active TSS	NHDF-Ad	bronchial
11	chr10:119008200-119009200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:119008200-119009200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr10:119008200-119009600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:119008400-119008600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr10:119008400-119008600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
16	chr10:119008400-119008600	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr10:119008400-119008600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:119008400-119008600	Flanking Active TSS	Fetal Thymus	thymus
19	chr10:119008400-119008800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr10:119008400-119008800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:119008400-119009200	Enhancers	Fetal Stomach	stomach
22	chr10:119008400-119009600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:119008400-119009800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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