Variant report

Variant	rs363390
Chromosome Location	chr10:119004079-119004080
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11197932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2283137	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3026047	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs363332	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs363334	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs363337	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs363338	0.82[CEU][hapmap]
rs363340	0.80[EUR][1000 genomes]
rs363341	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs363371	0.85[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs363399	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs363404	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4081624	0.82[EUR][1000 genomes]
rs60543597	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	esv1812234	chr10:118977123-119004095	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119001600-119010200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:119001600-119013400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:119001800-119008000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:119001800-119011800	Weak transcription	Ovary	ovary
5	chr10:119002200-119008200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:119003400-119004800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:119003600-119004400	Genic enhancers	Primary T cells from cord blood	blood
8	chr10:119004000-119004200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
9	chr10:119004000-119004400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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