Variant report

Variant	rs363334
Chromosome Location	chr10:119004995-119004996
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11197932	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2283137	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3026047	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs363332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs363337	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs363338	0.82[CEU][hapmap]
rs363340	0.81[EUR][1000 genomes]
rs363341	0.95[CEU][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs363371	0.85[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs363390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs363399	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs363404	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4081624	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60543597	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs363334	WDR11	cis	cerebellum	SCAN
rs363334	C10orf82	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119001600-119010200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:119001600-119013400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:119001800-119008000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:119001800-119011800	Weak transcription	Ovary	ovary
5	chr10:119002200-119008200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:119004400-119005800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:119004400-119006800	Enhancers	Fetal Thymus	thymus
8	chr10:119004800-119005600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:119004800-119006600	Enhancers	Thymus	Thymus
10	chr10:119004800-119007000	Enhancers	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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