Variant report

Variant	rs3108834
Chromosome Location	chr8:110698089-110698090
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr8:110697875-110699019	MCF-7	breast:	n/a	chr8:110698433-110698451 chr8:110698432-110698452 chr8:110698432-110698452 chr8:110698438-110698447 chr8:110698432-110698446 chr8:110698432-110698452
2	REST	chr8:110698041-110699018	ECC-1	luminal epithelium:	n/a	chr8:110698433-110698451 chr8:110698432-110698452 chr8:110698432-110698452 chr8:110698438-110698447 chr8:110698432-110698446 chr8:110698432-110698452
3	REST	chr8:110698057-110698886	ECC-1	luminal epithelium:	n/a	chr8:110698433-110698451 chr8:110698432-110698452 chr8:110698432-110698452 chr8:110698438-110698447 chr8:110698432-110698446 chr8:110698432-110698452
4	REST	chr8:110698075-110698608	SK-N-SH	brain:	n/a	chr8:110698433-110698451 chr8:110698432-110698452 chr8:110698432-110698452 chr8:110698438-110698447 chr8:110698432-110698446 chr8:110698432-110698452
5	REST	chr8:110698058-110698899	Hela-S3	cervix:	n/a	chr8:110698433-110698451 chr8:110698432-110698452 chr8:110698432-110698452 chr8:110698438-110698447 chr8:110698432-110698446 chr8:110698432-110698452
6	REST	chr8:110698045-110698824	A549	lung:	n/a	chr8:110698433-110698451 chr8:110698432-110698452 chr8:110698432-110698452 chr8:110698438-110698447 chr8:110698432-110698446 chr8:110698432-110698452
7	REST	chr8:110698065-110698712	U87	brain:	n/a	chr8:110698433-110698451 chr8:110698432-110698452 chr8:110698432-110698452 chr8:110698438-110698447 chr8:110698432-110698446 chr8:110698432-110698452
8	REST	chr8:110698065-110698798	PANC-1	pancreas:	n/a	chr8:110698433-110698451 chr8:110698432-110698452 chr8:110698432-110698452 chr8:110698438-110698447 chr8:110698432-110698446 chr8:110698432-110698452
9	REST	chr8:110697966-110698986	HL-60	blood:	n/a	chr8:110698433-110698451 chr8:110698432-110698452 chr8:110698432-110698452 chr8:110698438-110698447 chr8:110698432-110698446 chr8:110698432-110698452

Variant related genes	Relation type
SYBU	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10100734	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13270118	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1954713	0.83[EUR][1000 genomes]
rs2022930	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2154656	0.83[EUR][1000 genomes]
rs2703383	0.83[EUR][1000 genomes]
rs2844243	0.83[EUR][1000 genomes]
rs2844250	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs3108830	0.83[EUR][1000 genomes]
rs3108835	0.86[EUR][1000 genomes]
rs3108836	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108841	0.82[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs3108855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3108867	0.83[EUR][1000 genomes]
rs3133920	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133923	0.83[EUR][1000 genomes]
rs3133931	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3133932	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133938	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3133939	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3134316	0.83[EUR][1000 genomes]
rs3134318	0.83[EUR][1000 genomes]
rs3134326	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134328	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3134329	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134332	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3134333	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3134335	0.83[EUR][1000 genomes]
rs3134336	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3134337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3134338	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34147744	0.83[EUR][1000 genomes]
rs34649979	0.83[EUR][1000 genomes]
rs35642643	0.83[EUR][1000 genomes]
rs61152293	0.81[EUR][1000 genomes]
rs6469274	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs71526740	0.83[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3108834	PKHD1L1	Cis_1M	lymphoblastoid	RTeQTL
rs3108834	PKHD1L1	cis	multi-tissue	Pritchard

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110695600-110699000	Weak transcription	Fetal Intestine Small	intestine
2	chr8:110697800-110698600	Active TSS	Pancreatic Islets	Pancreatic Islet

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