Variant report

Variant	rs3108835
Chromosome Location	chr8:110695725-110695726
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10100734	0.83[EUR][1000 genomes]
rs13270118	0.86[EUR][1000 genomes]
rs1954713	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2154656	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2154658	0.84[EUR][1000 genomes]
rs2236627	0.82[EUR][1000 genomes]
rs2703383	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2703390	0.82[EUR][1000 genomes]
rs2844243	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3108830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108834	0.86[EUR][1000 genomes]
rs3108836	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3108841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3108845	0.88[AMR][1000 genomes]
rs3108848	0.85[AMR][1000 genomes]
rs3108855	0.85[EUR][1000 genomes]
rs3108867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3108872	0.90[AMR][1000 genomes]
rs3133920	0.83[EUR][1000 genomes]
rs3133923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133931	0.86[EUR][1000 genomes]
rs3133932	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3133933	0.86[EUR][1000 genomes]
rs3133938	0.83[EUR][1000 genomes]
rs3133939	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3133943	0.85[AMR][1000 genomes]
rs3133945	0.85[AMR][1000 genomes]
rs3133949	0.88[AMR][1000 genomes]
rs3134316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3134318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3134326	0.83[EUR][1000 genomes]
rs3134328	0.83[EUR][1000 genomes]
rs3134329	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3134332	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3134333	0.83[EUR][1000 genomes]
rs3134335	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3134336	0.83[EUR][1000 genomes]
rs3134337	0.83[EUR][1000 genomes]
rs3134338	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3134342	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34147744	0.97[EUR][1000 genomes]
rs34649979	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35642643	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71526740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3108835	PKHD1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110693400-110696600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:110693600-110696800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:110693600-110696800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:110695600-110699000	Weak transcription	Fetal Intestine Small	intestine

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