Variant report

Variant	rs3133945
Chromosome Location	chr8:110725294-110725295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1954713	0.91[MEX][hapmap]
rs2703383	0.91[MEX][hapmap]
rs3102253	0.88[ASN][1000 genomes]
rs3102254	0.88[ASN][1000 genomes]
rs3108830	0.85[AMR][1000 genomes]
rs3108835	0.85[AMR][1000 genomes]
rs3108841	0.85[AMR][1000 genomes]
rs3108845	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3108848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108867	0.85[AMR][1000 genomes]
rs3108872	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108873	0.80[ASN][1000 genomes]
rs3108874	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3108875	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3133923	0.85[AMR][1000 genomes]
rs3133943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133947	0.80[ASN][1000 genomes]
rs3133949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3133952	0.80[ASN][1000 genomes]
rs3133953	0.80[ASN][1000 genomes]
rs3133962	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3133963	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3133965	0.91[ASN][1000 genomes]
rs3133966	0.91[ASN][1000 genomes]
rs3133969	0.89[ASN][1000 genomes]
rs3134316	0.85[AMR][1000 genomes]
rs3134318	0.85[AMR][1000 genomes]
rs3134335	0.88[AMR][1000 genomes]
rs3134338	0.81[AMR][1000 genomes]
rs3134342	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3134343	0.80[ASN][1000 genomes]
rs3134344	0.80[ASN][1000 genomes]
rs35327785	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4515520	0.88[ASN][1000 genomes]
rs71526740	0.85[AMR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3133945	SYBU	cis	cerebellum	SCAN
rs3133945	EBAG9	cis	lymphoblastoid	seeQTL
rs3133945	PKHD1L1	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110722800-110730800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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