Variant report

Variant	rs3134342
Chromosome Location	chr8:110720214-110720215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1954713	1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs2022930	0.82[MEX][hapmap]
rs2154656	0.82[EUR][1000 genomes]
rs2236627	0.82[MEX][hapmap];0.94[TSI][hapmap]
rs2703383	1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs2844243	0.82[EUR][1000 genomes]
rs3102253	0.80[ASN][1000 genomes]
rs3102254	0.80[ASN][1000 genomes]
rs3108830	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3108835	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3108841	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3108845	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3108848	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3108867	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3108872	0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3108874	0.87[ASN][1000 genomes]
rs3108875	0.88[ASN][1000 genomes]
rs3133923	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3133943	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3133945	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3133949	0.95[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3133962	0.88[ASN][1000 genomes]
rs3133963	0.88[ASN][1000 genomes]
rs3133965	0.83[ASN][1000 genomes]
rs3133966	0.83[ASN][1000 genomes]
rs3133969	0.82[ASN][1000 genomes]
rs3134316	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3134318	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3134335	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3134338	1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34147744	0.82[EUR][1000 genomes]
rs34649979	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35327785	0.88[ASN][1000 genomes]
rs35642643	0.82[EUR][1000 genomes]
rs4515520	0.80[ASN][1000 genomes]
rs71526740	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3134342	PKHD1L1	cis	lymphoblastoid	seeQTL
rs3134342	PKHD1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110720200-110720600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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