Variant report

Variant	rs3108874
Chromosome Location	chr8:110742790-110742791
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs3102253	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3102254	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3108845	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3108848	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3108872	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3108875	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3133943	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3133945	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3133949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3133962	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3133963	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3133965	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3133966	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3133969	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3134342	0.87[ASN][1000 genomes]
rs35327785	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4515520	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3108874	PKHD1L1	cis	multi-tissue	Pritchard

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110742000-110742800	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr8:110742400-110742800	Enhancers	Primary hematopoietic stem cells	blood
3	chr8:110742400-110743200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:110742400-110743200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:110742400-110743400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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