Variant report
| Variant | rs3133949 |
|---|---|
| Chromosome Location | chr8:110732604-110732605 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:9)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:9 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:110732152..110735103-chr8:110737032..110738620,2 | K562 | blood: | |
| 2 | chr8:110573990..110574750-chr8:110732249..110733005,3 | MCF-7 | breast: | |
| 3 | chr8:109902653..109903207-chr8:110732202..110732705,2 | K562 | blood: | |
| 4 | chr8:110463281..110463836-chr8:110732082..110732942,2 | MCF-7 | breast: | |
| 5 | chr8:110664332..110665340-chr8:110732244..110733184,5 | MCF-7 | breast: | |
| 6 | chr8:110359216..110359728-chr8:110732130..110733070,2 | MCF-7 | breast: | |
| 7 | chr8:110656653..110657490-chr8:110732162..110732931,3 | MCF-7 | breast: | |
| 8 | chr8:110664503..110665173-chr8:110732488..110733083,2 | MCF-7 | breast: | |
| 9 | chr8:110655979..110657401-chr8:110732154..110732912,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000248050 | Chromatin interaction |
| ENSG00000147642 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs3102253 | 0.88[ASN][1000 genomes] |
| rs3102254 | 0.88[ASN][1000 genomes] |
| rs3108830 | 0.88[AMR][1000 genomes] |
| rs3108835 | 0.88[AMR][1000 genomes] |
| rs3108841 | 0.88[AMR][1000 genomes] |
| rs3108845 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3108848 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3108867 | 0.88[AMR][1000 genomes] |
| rs3108872 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3108873 | 0.80[ASN][1000 genomes] |
| rs3108874 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3108875 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3133923 | 0.88[AMR][1000 genomes] |
| rs3133943 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3133945 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3133947 | 0.80[ASN][1000 genomes] |
| rs3133952 | 0.80[ASN][1000 genomes] |
| rs3133953 | 0.80[ASN][1000 genomes] |
| rs3133962 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3133963 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3133965 | 0.91[ASN][1000 genomes] |
| rs3133966 | 0.91[ASN][1000 genomes] |
| rs3133969 | 0.89[ASN][1000 genomes] |
| rs3134316 | 0.88[AMR][1000 genomes] |
| rs3134318 | 0.88[AMR][1000 genomes] |
| rs3134335 | 0.85[AMR][1000 genomes] |
| rs3134342 | 0.92[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3134343 | 0.80[ASN][1000 genomes] |
| rs3134344 | 0.80[ASN][1000 genomes] |
| rs34649979 | 0.80[AMR][1000 genomes] |
| rs35327785 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4515520 | 0.88[ASN][1000 genomes] |
| rs71526740 | 0.88[AMR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
