Variant report

Variant	rs3108841
Chromosome Location	chr8:110714080-110714081
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110347445..110349148-chr8:110712689..110714629,2	K562	blood:

Variant related genes	Relation type
ENSG00000120533	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10100734	0.81[EUR][1000 genomes]
rs13270118	0.83[EUR][1000 genomes]
rs1954713	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2022930	0.89[CEU][hapmap]
rs2154656	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2154658	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs2703383	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2844243	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2844250	0.90[CEU][hapmap]
rs3108830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3108834	0.82[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs3108835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3108836	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3108845	0.88[AMR][1000 genomes]
rs3108848	0.85[AMR][1000 genomes]
rs3108855	0.89[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes]
rs3108867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3108872	0.90[AMR][1000 genomes]
rs3133920	0.81[EUR][1000 genomes]
rs3133923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3133931	0.83[EUR][1000 genomes]
rs3133932	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3133933	0.90[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs3133938	0.86[EUR][1000 genomes]
rs3133939	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3133943	0.85[AMR][1000 genomes]
rs3133945	0.85[AMR][1000 genomes]
rs3133949	0.88[AMR][1000 genomes]
rs3134316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134326	0.81[EUR][1000 genomes]
rs3134328	0.81[EUR][1000 genomes]
rs3134329	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3134332	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3134333	0.86[EUR][1000 genomes]
rs3134335	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134336	0.86[EUR][1000 genomes]
rs3134337	0.89[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes]
rs3134338	0.89[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3134342	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34147744	0.94[EUR][1000 genomes]
rs34649979	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35642643	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6469274	0.89[CEU][hapmap]
rs71526740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3108841	PKHD1L1	cis	multi-tissue	Pritchard
rs3108841	PKHD1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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