Variant report

Variant	rs71526740
Chromosome Location	chr8:110670663-110670664
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110669997..110672035-chr8:110674199..110676102,2	MCF-7	breast:
2	chr8:110552007..110554133-chr8:110670328..110672322,2	K562	blood:
3	chr8:110664832..110666386-chr8:110668699..110671644,3	K562	blood:

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10100734	0.86[EUR][1000 genomes]
rs13270118	0.83[EUR][1000 genomes]
rs1954713	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2154656	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2154658	0.86[EUR][1000 genomes]
rs2236627	0.85[EUR][1000 genomes]
rs2703383	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2703390	0.85[EUR][1000 genomes]
rs2844243	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3108830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3108834	0.83[EUR][1000 genomes]
rs3108835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3108836	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3108841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3108845	0.88[AMR][1000 genomes]
rs3108848	0.85[AMR][1000 genomes]
rs3108855	0.82[EUR][1000 genomes]
rs3108867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3108872	0.90[AMR][1000 genomes]
rs3133920	0.86[EUR][1000 genomes]
rs3133923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3133931	0.83[EUR][1000 genomes]
rs3133932	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3133933	0.83[EUR][1000 genomes]
rs3133938	0.81[EUR][1000 genomes]
rs3133939	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3133943	0.85[AMR][1000 genomes]
rs3133945	0.85[AMR][1000 genomes]
rs3133949	0.88[AMR][1000 genomes]
rs3134316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134326	0.86[EUR][1000 genomes]
rs3134328	0.86[EUR][1000 genomes]
rs3134329	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3134332	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3134333	0.81[EUR][1000 genomes]
rs3134335	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134336	0.81[EUR][1000 genomes]
rs3134337	0.81[EUR][1000 genomes]
rs3134338	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3134342	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34147744	1.00[EUR][1000 genomes]
rs34649979	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35642643	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849702	chr8:110594148-110683804	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110668200-110670800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:110669200-110672000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:110669400-110670800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:110670400-110676800	Weak transcription	Fetal Brain Male	brain

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