Variant report

Variant	rs3134338
Chromosome Location	chr8:110711024-110711025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:110550216..110552555-chr8:110709371..110711173,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10100734	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13254530	0.81[CHB][hapmap]
rs13270118	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1954713	0.89[CEU][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2154656	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs2236627	0.94[TSI][hapmap]
rs2703383	0.89[CEU][hapmap];0.81[GIH][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs2844243	0.91[EUR][1000 genomes]
rs3108830	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3108834	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3108835	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3108836	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3108841	0.89[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3108848	0.81[AMR][1000 genomes]
rs3108855	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3108867	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3108872	0.80[AMR][1000 genomes]
rs3133920	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3133923	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3133931	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3133932	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3133933	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3133938	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3133939	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3133943	0.81[AMR][1000 genomes]
rs3133945	0.81[AMR][1000 genomes]
rs3134316	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3134318	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3134326	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3134328	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3134329	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3134332	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3134333	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3134335	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3134336	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3134337	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3134342	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34147744	0.91[EUR][1000 genomes]
rs34649979	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35642643	0.91[EUR][1000 genomes]
rs71526740	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3134338	PKHD1L1	cis	lymphoblastoid	seeQTL
rs3134338	PKHD1L1	cis	multi-tissue	Pritchard
rs3134338	PKHD1L1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links