Variant report

Variant	rs3126017
Chromosome Location	chr1:58161632-58161633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11577122	0.85[CEU][hapmap];0.90[YRI][hapmap]
rs12038397	0.82[YRI][hapmap]
rs3126011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3126012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3126013	0.93[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3126014	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs3126015	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3126018	0.81[CEU][hapmap];0.92[EUR][1000 genomes]
rs3126030	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs3126031	0.92[CEU][hapmap]
rs3126034	0.89[CEU][hapmap]
rs3126035	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3126036	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131750	0.92[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3131751	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs3131752	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs3131755	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131756	0.93[CEU][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3131757	0.92[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3131758	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3131759	0.93[CEU][hapmap];1.00[YRI][hapmap]
rs3131760	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs3131761	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs3131763	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3131765	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs3131767	0.92[CEU][hapmap]
rs3131768	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3131772	0.92[CEU][hapmap]
rs3131773	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs3131775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4076378	0.85[CEU][hapmap]
rs4244008	0.85[CEU][hapmap]
rs4244011	0.85[CEU][hapmap]
rs4244012	0.85[CEU][hapmap];0.89[YRI][hapmap]
rs4379695	0.85[CEU][hapmap]
rs4912171	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4912273	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs4912274	0.85[CEU][hapmap]
rs61769639	0.84[EUR][1000 genomes]
rs6696766	0.85[CEU][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs7526173	0.85[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58161400-58164000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:58161600-58162000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:58161600-58162400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:58161600-58162600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:58161600-58162600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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