Variant report

Variant	rs3131751
Chromosome Location	chr1:58141173-58141174
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:58133234..58135282-chr1:58139116..58141569,2	K562	blood:
2	chr1:58138959..58141721-chr1:58142053..58144092,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11577122	0.92[CEU][hapmap];0.88[YRI][hapmap]
rs3126011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3126012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3126013	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3126014	1.00[CEU][hapmap]
rs3126015	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3126017	0.92[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3126018	0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs3126030	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs3126031	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap]
rs3126034	0.96[CEU][hapmap];1.00[JPT][hapmap]
rs3126035	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3126036	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3131750	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131752	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3131755	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];0.96[LWK][hapmap];0.95[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3131756	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131757	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131758	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131759	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3131760	0.96[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3131761	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs3131763	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3131765	1.00[CEU][hapmap]
rs3131767	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3131768	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3131772	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs3131773	1.00[CEU][hapmap]
rs3131775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4076378	0.92[CEU][hapmap];0.84[CHD][hapmap];0.84[TSI][hapmap]
rs4244008	0.92[CEU][hapmap]
rs4244011	0.92[CEU][hapmap];0.83[CHD][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap]
rs4244012	0.81[ASW][hapmap];0.92[CEU][hapmap];0.84[CHD][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.89[YRI][hapmap]
rs4379695	0.92[CEU][hapmap]
rs4912171	0.92[CEU][hapmap]
rs4912273	0.91[CEU][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes]
rs4912274	0.81[ASW][hapmap];0.92[CEU][hapmap];0.82[CHD][hapmap];0.84[TSI][hapmap]
rs61769639	0.89[EUR][1000 genomes]
rs6696766	0.92[CEU][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes]
rs7526173	0.92[CEU][hapmap];1.00[CHD][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv871620	chr1:58127171-58157778	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links