Variant report

Variant	rs4076378
Chromosome Location	chr1:58134104-58134105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:58133234..58135282-chr1:58139116..58141569,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11577122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3126011	0.89[EUR][1000 genomes]
rs3126012	0.89[EUR][1000 genomes]
rs3126013	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs3126014	0.92[CEU][hapmap]
rs3126015	0.92[CEU][hapmap]
rs3126017	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs3126030	0.92[CEU][hapmap];0.84[CHD][hapmap];0.84[TSI][hapmap]
rs3126031	0.92[CEU][hapmap];0.84[CHD][hapmap];0.84[TSI][hapmap]
rs3126034	0.88[CEU][hapmap]
rs3126035	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs3126036	0.88[EUR][1000 genomes]
rs3131750	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs3131751	0.92[CEU][hapmap];0.84[CHD][hapmap];0.84[TSI][hapmap]
rs3131752	0.89[CEU][hapmap]
rs3131755	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs3131756	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs3131757	0.92[CEU][hapmap];0.84[CHD][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs3131758	0.89[EUR][1000 genomes]
rs3131759	0.92[CEU][hapmap]
rs3131760	0.88[CEU][hapmap]
rs3131761	0.92[CEU][hapmap];0.84[CHD][hapmap];0.84[TSI][hapmap]
rs3131763	0.92[CEU][hapmap]
rs3131765	0.92[CEU][hapmap]
rs3131767	0.92[CEU][hapmap]
rs3131768	0.92[CEU][hapmap]
rs3131772	0.92[CEU][hapmap];0.84[CHD][hapmap];0.84[TSI][hapmap]
rs3131773	0.92[CEU][hapmap]
rs3131775	0.88[EUR][1000 genomes]
rs4244008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4244011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs4244012	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs4379695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4912171	0.84[CEU][hapmap]
rs4912273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4912274	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap]
rs61769639	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696766	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7526173	1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv871620	chr1:58127171-58157778	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links