Variant report

Variant	rs6696766
Chromosome Location	chr1:58124551-58124552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11577122	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12029004	0.89[YRI][hapmap]
rs12038397	0.91[YRI][hapmap]
rs1404384	0.89[YRI][hapmap]
rs3126011	0.88[EUR][1000 genomes]
rs3126012	0.88[EUR][1000 genomes]
rs3126013	0.93[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs3126014	0.93[CEU][hapmap]
rs3126015	0.93[CEU][hapmap];0.91[YRI][hapmap]
rs3126017	0.85[CEU][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes]
rs3126030	0.92[CEU][hapmap];0.89[YRI][hapmap]
rs3126031	0.92[CEU][hapmap]
rs3126034	0.89[CEU][hapmap]
rs3126035	0.93[CEU][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs3126036	0.88[EUR][1000 genomes]
rs3131750	0.92[CEU][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs3131751	0.92[CEU][hapmap];0.89[YRI][hapmap]
rs3131752	0.89[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs3131755	0.93[CEU][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes]
rs3131756	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs3131757	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs3131758	0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs3131759	0.93[CEU][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap]
rs3131760	0.89[CEU][hapmap];0.90[YRI][hapmap]
rs3131761	0.92[CEU][hapmap];0.89[YRI][hapmap]
rs3131763	0.93[CEU][hapmap];0.91[YRI][hapmap]
rs3131765	0.93[CEU][hapmap]
rs3131767	0.92[CEU][hapmap]
rs3131768	0.93[CEU][hapmap];0.91[YRI][hapmap]
rs3131772	0.92[CEU][hapmap]
rs3131773	0.93[CEU][hapmap]
rs3131775	0.87[EUR][1000 genomes]
rs4076378	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4244008	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4244011	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4244012	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4379695	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4912171	0.85[CEU][hapmap]
rs4912273	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4912274	1.00[CEU][hapmap];0.93[JPT][hapmap];0.89[YRI][hapmap]
rs61769639	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7526173	1.00[CEU][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58124400-58124800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:58124400-58125000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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