Variant report

Variant	rs3126035
Chromosome Location	chr1:58144942-58144943
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11577122	0.93[CEU][hapmap];0.90[YRI][hapmap]
rs12038397	0.82[YRI][hapmap]
rs3126011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3126012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3126013	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3126014	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3126015	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3126017	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3126018	0.85[EUR][1000 genomes]
rs3126030	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3126031	1.00[CEU][hapmap]
rs3126034	0.96[CEU][hapmap]
rs3126036	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131750	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3131751	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3131752	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs3131755	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3131756	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3131757	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3131758	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3131759	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3131760	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs3131761	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3131763	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3131765	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3131767	1.00[CEU][hapmap]
rs3131768	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3131772	1.00[CEU][hapmap]
rs3131773	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3131775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4076378	0.92[CEU][hapmap]
rs4244008	0.93[CEU][hapmap]
rs4244011	0.92[CEU][hapmap]
rs4244012	0.92[CEU][hapmap];0.89[YRI][hapmap]
rs4379695	0.92[CEU][hapmap]
rs4912171	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs4912273	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs4912274	0.92[CEU][hapmap]
rs61769639	0.89[EUR][1000 genomes]
rs6696766	0.93[CEU][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes]
rs7526173	0.92[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv871620	chr1:58127171-58157778	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58143600-58145000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
2	chr1:58144200-58148600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:58144600-58145600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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