The 2.0 version of rSNPBase

Variant report

Variant rs334560
Chromosome Location chr3:119782470-119782471
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:119759400-119786200 Weak transcription Hela-S3 cervix
2 chr3:119760200-119805400 Weak transcription HMEC breast
3 chr3:119764600-119812000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr3:119768800-119792800 Weak transcription Fetal Stomach stomach
5 chr3:119769200-119804400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr3:119769800-119784800 Weak transcription Dnd41 blood
7 chr3:119771400-119809400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr3:119771800-119783600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr3:119771800-119805400 Weak transcription NHEK skin
10 chr3:119773200-119807600 Weak transcription Right Ventricle heart
11 chr3:119773800-119787800 Weak transcription Primary hematopoietic stem cells short term culture blood
12 chr3:119774000-119789600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr3:119775400-119782600 Weak transcription Esophagus oesophagus
14 chr3:119775800-119784200 Weak transcription Fetal Intestine Small intestine
15 chr3:119775800-119790400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr3:119775800-119796000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr3:119775800-119797600 Weak transcription Fetal Thymus thymus
18 chr3:119778400-119784400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr3:119778600-119786400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr3:119778800-119786000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr3:119778800-119787800 Weak transcription Primary B cells from cord blood blood
22 chr3:119778800-119791200 Weak transcription Fetal Brain Female brain
23 chr3:119778800-119796000 Weak transcription NHDF-Ad bronchial
24 chr3:119778800-119796400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr3:119779000-119788200 Weak transcription iPS-18 Cell Line embryonic stem cell
26 chr3:119779200-119783400 Weak transcription Fetal Heart heart
27 chr3:119779200-119789200 Weak transcription Primary T regulatory cells fromperipheralblood blood
28 chr3:119779200-119789200 Weak transcription Duodenum Mucosa Duodenum
29 chr3:119779200-119789200 Weak transcription A549 lung
30 chr3:119779400-119783400 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr3:119779400-119789200 Weak transcription Brain Hippocampus Middle brain
32 chr3:119779400-119804200 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr3:119779400-119807400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr3:119779600-119784200 Weak transcription Psoas Muscle Psoas
35 chr3:119779600-119786400 Weak transcription Primary T helper naive cells fromperipheralblood blood
36 chr3:119779600-119787800 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr3:119779600-119789200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr3:119779600-119789600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr3:119779600-119789800 Weak transcription Small Intestine intestine
40 chr3:119779600-119793000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
41 chr3:119779600-119800200 Weak transcription Fetal Adrenal Gland Adrenal Gland
42 chr3:119779600-119807800 Weak transcription Cortex derived primary cultured neurospheres brain
43 chr3:119779800-119783600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
44 chr3:119779800-119786200 Weak transcription HUES48 Cell Line embryonic stem cell
45 chr3:119779800-119793000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
46 chr3:119780000-119783400 Weak transcription Brain Anterior Caudate brain
47 chr3:119780000-119783600 Weak transcription GM12878-XiMat blood
48 chr3:119780000-119784600 Weak transcription Primary T cells from cord blood blood
49 chr3:119780000-119786400 Weak transcription iPS-20b Cell Line embryonic stem cell
50 chr3:119780000-119788200 Weak transcription Primary T killer memory cells from peripheral blood blood

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Last update: Aug 31, 2015