Variant report

Variant	rs7635604
Chromosome Location	chr3:119709304-119709305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119707707..119709811-chr3:119807417..119810335,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1154596	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1154597	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921053	1.00[ASN][1000 genomes]
rs13312998	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1626696	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16830683	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1719888	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1719895	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1732165	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1732169	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs182839	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs184576	0.83[EUR][1000 genomes]
rs2461827	0.91[ASN][1000 genomes]
rs3108749	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs334534	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs334536	0.94[ASN][1000 genomes]
rs334551	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs334552	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs334554	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs334560	0.94[ASN][1000 genomes]
rs334561	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs334565	0.80[AFR][1000 genomes]
rs334566	0.94[ASN][1000 genomes]
rs3853592	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4438691	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4605584	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4688043	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56126162	0.84[ASN][1000 genomes]
rs58043853	0.81[ASN][1000 genomes]
rs60272712	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438550	0.88[AFR][1000 genomes]
rs6438554	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438555	0.94[ASN][1000 genomes]
rs66650215	0.97[ASN][1000 genomes]
rs6762640	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6764558	0.80[AFR][1000 genomes]
rs6769435	0.84[ASN][1000 genomes]
rs6770314	0.84[ASN][1000 genomes]
rs6771023	1.00[ASN][1000 genomes]
rs6774693	1.00[ASN][1000 genomes]
rs6784239	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785050	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795874	0.84[ASN][1000 genomes]
rs6797689	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6805931	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6807868	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7613197	0.84[ASN][1000 genomes]
rs7624540	0.91[ASN][1000 genomes]
rs7628426	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7636600	1.00[ASN][1000 genomes]
rs7650554	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9289138	0.84[ASN][1000 genomes]
rs968824	0.94[ASN][1000 genomes]
rs9784393	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9879992	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949589	chr3:119560606-120175917	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv829696	chr3:119567659-119711405	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1001476	chr3:119575386-120075417	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv536704	chr3:119575386-120075417	Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119631000-119717000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:119656600-119718400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:119665800-119716800	Weak transcription	HSMM	muscle
4	chr3:119681200-119723200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:119687200-119716600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:119689000-119710600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:119689000-119711800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:119689000-119722600	Weak transcription	Gastric	stomach
9	chr3:119692400-119717000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:119692400-119723200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:119693600-119732200	Weak transcription	A549	lung
12	chr3:119698400-119709400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:119700600-119722800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:119700800-119717000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:119701000-119720000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:119701000-119722600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:119701400-119712400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:119701800-119717200	Weak transcription	Fetal Thymus	thymus
19	chr3:119706000-119711000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr3:119706000-119711400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr3:119706000-119717000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr3:119706200-119717000	Weak transcription	Primary B cells from cord blood	blood
23	chr3:119706400-119709800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:119707400-119712000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr3:119707400-119716600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:119707600-119709800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:119707600-119712000	Weak transcription	Small Intestine	intestine
28	chr3:119708000-119709600	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr3:119708000-119710000	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr3:119708200-119716800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr3:119708400-119709400	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr3:119708400-119709600	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr3:119708400-119710400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:119708600-119709800	Enhancers	Psoas Muscle	Psoas
35	chr3:119708600-119710200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:119708800-119709600	Enhancers	Left Ventricle	heart
37	chr3:119708800-119711400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr3:119709000-119709400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:119709000-119710200	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr3:119709000-119722600	Weak transcription	Ovary	ovary
41	chr3:119709200-119710200	Enhancers	HMEC	breast
42	chr3:119709200-119710400	Enhancers	Hela-S3	cervix
43	chr3:119709200-119723000	Weak transcription	Spleen	Spleen

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