Variant report

Variant	rs336221
Chromosome Location	chr13:110521100-110521101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110516111..110518127-chr13:110519697..110522544,3	MCF-7	breast:
2	chr13:110521072..110521899-chr13:110651072..110651611,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs336223	1.00[AMR][1000 genomes]
rs336249	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55802025	1.00[AMR][1000 genomes]
rs55960855	1.00[AMR][1000 genomes]
rs56157878	1.00[AMR][1000 genomes]
rs60427107	1.00[AMR][1000 genomes]
rs74123771	1.00[AMR][1000 genomes]
rs74123802	1.00[AMR][1000 genomes]
rs74126026	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv32627	chr13:110515211-110524579	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110515600-110521200	Weak transcription	HSMM	muscle
2	chr13:110515800-110521200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:110516000-110521600	Weak transcription	NHEK	skin
4	chr13:110516000-110523400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr13:110519000-110521800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr13:110520000-110521200	Enhancers	Pancreas	Pancrea
7	chr13:110520000-110521600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr13:110520200-110521400	Enhancers	A549	lung
9	chr13:110520200-110521600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr13:110520200-110521600	Enhancers	Rectal Smooth Muscle	rectum
11	chr13:110520200-110521800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:110520200-110521800	Enhancers	Small Intestine	intestine
13	chr13:110520200-110522200	Enhancers	Hela-S3	cervix
14	chr13:110520400-110521400	Enhancers	Duodenum Mucosa	Duodenum
15	chr13:110520600-110521800	Enhancers	Liver	Liver
16	chr13:110520800-110521600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr13:110520800-110521600	Enhancers	Fetal Intestine Small	intestine
18	chr13:110520800-110521800	Enhancers	Placenta	Placenta
19	chr13:110521000-110521200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr13:110521000-110521200	Bivalent/Poised TSS	Fetal Lung	lung
21	chr13:110521000-110521200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
22	chr13:110521000-110521200	Enhancers	HSMMtube	muscle
23	chr13:110521000-110521400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:110521000-110521600	Enhancers	Adipose Nuclei	Adipose
25	chr13:110521000-110521600	Weak transcription	Brain Germinal Matrix	brain
26	chr13:110521000-110521600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr13:110521000-110521800	Enhancers	Esophagus	oesophagus
28	chr13:110521000-110522000	Enhancers	Dnd41	blood
29	chr13:110521000-110523000	Enhancers	Spleen	Spleen

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