Variant report

Variant	rs60427107
Chromosome Location	chr13:110530216-110530217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs336221	1.00[AMR][1000 genomes]
rs336223	1.00[AMR][1000 genomes]
rs336249	1.00[AMR][1000 genomes]
rs55802025	1.00[AMR][1000 genomes]
rs55960855	1.00[AMR][1000 genomes]
rs56157878	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74123771	1.00[AMR][1000 genomes]
rs74123802	1.00[AMR][1000 genomes]
rs74126026	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110522600-110537000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:110528200-110532800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr13:110528200-110533000	Weak transcription	Fetal Heart	heart
4	chr13:110528400-110530800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:110528800-110530400	Weak transcription	Aorta	Aorta
6	chr13:110528800-110532600	Weak transcription	Placenta	Placenta
7	chr13:110528800-110535600	Weak transcription	Left Ventricle	heart
8	chr13:110528800-110537000	Weak transcription	Right Atrium	heart
9	chr13:110529000-110531200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:110529000-110537000	Weak transcription	Right Ventricle	heart
11	chr13:110530200-110530400	Enhancers	Fetal Brain Male	brain
12	chr13:110530200-110530400	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links