Variant report

Variant	rs74126026
Chromosome Location	chr13:110526518-110526519
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs336221	1.00[AMR][1000 genomes]
rs336223	1.00[AMR][1000 genomes]
rs336249	1.00[AMR][1000 genomes]
rs55802025	1.00[AMR][1000 genomes]
rs55960855	1.00[AMR][1000 genomes]
rs56157878	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60427107	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74123771	1.00[AMR][1000 genomes]
rs74123802	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110522400-110526800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr13:110522600-110526800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr13:110522600-110526800	Weak transcription	Osteobl	bone
4	chr13:110522600-110527000	Weak transcription	Liver	Liver
5	chr13:110522600-110527600	Weak transcription	Fetal Brain Female	brain
6	chr13:110522600-110537000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:110522800-110526600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:110522800-110526800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:110522800-110528000	Weak transcription	Aorta	Aorta
10	chr13:110523000-110527000	Weak transcription	Right Ventricle	heart
11	chr13:110523000-110527000	Weak transcription	NHLF	lung
12	chr13:110523000-110528000	Weak transcription	Spleen	Spleen
13	chr13:110523000-110528200	Weak transcription	Lung	lung
14	chr13:110523200-110526600	Weak transcription	A549	lung
15	chr13:110523200-110526800	Weak transcription	NH-A	brain
16	chr13:110523200-110527000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr13:110523600-110527000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:110523600-110528400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:110523800-110527000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr13:110525200-110527000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr13:110525200-110528800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr13:110525200-110529000	Enhancers	Dnd41	blood
23	chr13:110525600-110529000	Enhancers	HSMMtube	muscle
24	chr13:110525600-110529200	Enhancers	HSMM	muscle
25	chr13:110525800-110526600	Enhancers	Left Ventricle	heart
26	chr13:110525800-110528800	Enhancers	Placenta	Placenta
27	chr13:110525800-110528800	Enhancers	Pancreas	Pancrea
28	chr13:110526000-110526800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr13:110526200-110527200	Enhancers	Fetal Intestine Small	intestine
30	chr13:110526200-110528200	Enhancers	Fetal Heart	heart
31	chr13:110526200-110528400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr13:110526200-110528800	Enhancers	Right Atrium	heart
33	chr13:110526400-110527800	Enhancers	Adipose Nuclei	Adipose
34	chr13:110526400-110527800	Enhancers	Hela-S3	cervix
35	chr13:110526400-110528200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr13:110526400-110529200	Enhancers	Fetal Brain Male	brain

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