Variant report

Variant	rs74123802
Chromosome Location	chr13:110471268-110471269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs336221	1.00[AMR][1000 genomes]
rs336223	1.00[AMR][1000 genomes]
rs336249	1.00[AMR][1000 genomes]
rs55802025	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55960855	1.00[AMR][1000 genomes]
rs56157878	1.00[AMR][1000 genomes]
rs60427107	1.00[AMR][1000 genomes]
rs74123771	1.00[AMR][1000 genomes]
rs74126026	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv826789	chr13:110387268-110473524	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110468800-110471400	Enhancers	NHEK	skin
2	chr13:110468800-110471600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:110470000-110471600	Enhancers	Fetal Muscle Leg	muscle
4	chr13:110470000-110473000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:110470200-110471600	Enhancers	Dnd41	blood
6	chr13:110470200-110473400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:110470600-110471400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr13:110470800-110472000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr13:110471000-110472800	Weak transcription	Pancreas	Pancrea
10	chr13:110471200-110471400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr13:110471200-110472200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:110471200-110473400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr13:110471200-110473400	Weak transcription	Esophagus	oesophagus
14	chr13:110471200-110476200	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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