Variant report

Variant	rs34487798
Chromosome Location	chr18:8670260-8670261
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8659422..8661406-chr18:8668712..8671092,2	K562	blood:
2	chr18:8668588..8670326-chr18:8673420..8675125,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11875412	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12457570	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12458130	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1861950	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34440925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34965651	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35737373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs480896	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs510525	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs516586	0.97[EUR][1000 genomes]
rs526313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs539715	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs573508	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577048	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58194828	0.94[EUR][1000 genomes]
rs598417	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs629299	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs642212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73392590	0.83[EUR][1000 genomes]
rs73392592	0.94[EUR][1000 genomes]
rs73942020	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8091166	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450483	chr18:8670052-8673550	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8653800-8703400	Weak transcription	Right Atrium	heart
2	chr18:8662200-8673400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr18:8663400-8671800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr18:8666000-8670600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr18:8667000-8672800	Weak transcription	A549	lung
6	chr18:8668600-8671800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr18:8668800-8673000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr18:8669600-8672200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr18:8669600-8674000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr18:8669800-8671800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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