Variant report

Variant	rs510525
Chromosome Location	chr18:8668283-8668284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8661421..8663171-chr18:8666380..8669348,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11875412	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12457570	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12458130	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1861950	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34440925	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34487798	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34965651	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35737373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs480896	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs516586	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs526313	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs539715	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs573508	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs577048	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58194828	0.94[EUR][1000 genomes]
rs598417	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs629299	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs629738	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs642212	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73392590	0.83[EUR][1000 genomes]
rs73392592	0.94[EUR][1000 genomes]
rs73942020	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8091166	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs510525	TIMM17B	trans	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8653800-8703400	Weak transcription	Right Atrium	heart
2	chr18:8662200-8673400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr18:8663400-8671800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr18:8665800-8668600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr18:8665800-8669200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr18:8666000-8670600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr18:8666600-8668600	Weak transcription	HMEC	breast
8	chr18:8667000-8672800	Weak transcription	A549	lung
9	chr18:8667400-8668800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr18:8667600-8668400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr18:8667600-8668800	Enhancers	HUVEC	blood vessel
12	chr18:8668000-8668400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr18:8668200-8668400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr18:8668200-8668600	Enhancers	NH-A	brain
15	chr18:8668200-8668800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr18:8668200-8669200	Enhancers	NHEK	skin

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