Variant report

Variant	rs539715
Chromosome Location	chr18:8667407-8667408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8665792..8667506-chr18:8682863..8685646,2	MCF-7	breast:
2	chr18:8661421..8663171-chr18:8666380..8669348,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11875412	0.94[ASN][1000 genomes]
rs12457570	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12458130	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1861950	0.88[ASN][1000 genomes]
rs34440925	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34487798	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34965651	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35737373	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs480896	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs510525	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs516586	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs526313	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs573508	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs577048	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs598417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs629299	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs629738	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs642212	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73392590	0.90[EUR][1000 genomes]
rs73942020	0.82[ASN][1000 genomes]
rs8091166	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8653800-8703400	Weak transcription	Right Atrium	heart
2	chr18:8662200-8673400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr18:8663400-8671800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr18:8665800-8668600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr18:8665800-8669200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr18:8666000-8667600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr18:8666000-8667600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr18:8666000-8667600	Weak transcription	NH-A	brain
9	chr18:8666000-8670600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr18:8666400-8668200	Weak transcription	NHEK	skin
11	chr18:8666600-8668200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr18:8666600-8668600	Weak transcription	HMEC	breast
13	chr18:8666800-8667600	Weak transcription	HUVEC	blood vessel
14	chr18:8666800-8668200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr18:8667000-8672800	Weak transcription	A549	lung
16	chr18:8667400-8668000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr18:8667400-8668800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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