Variant report

Variant	rs345328
Chromosome Location	chr4:86763901-86763902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86762784..86764294-chr4:86767286..86769112,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10516759	1.00[CHB][hapmap]
rs10516760	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10516761	1.00[CHB][hapmap]
rs10516762	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs1452681	1.00[CHB][hapmap]
rs17395020	1.00[CHB][hapmap]
rs17395916	1.00[CHB][hapmap]
rs17399123	1.00[CHB][hapmap]
rs17399707	1.00[CHB][hapmap]
rs17399908	1.00[CHB][hapmap]
rs17400185	1.00[CHB][hapmap]
rs2089763	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2601851	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs2601864	0.89[CEU][hapmap]
rs2601870	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3114384	1.00[CHB][hapmap]
rs343847	1.00[CHB][hapmap]
rs345330	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs345334	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs345340	0.81[EUR][1000 genomes]
rs345355	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs345359	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs345360	0.82[GIH][hapmap]
rs345363	0.87[GIH][hapmap]
rs56305839	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs745892	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv879518	chr4:86739805-86778943	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv470049	chr4:86750699-86776488	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
2	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86760000-86782600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:86761800-86778800	Weak transcription	Fetal Lung	lung
5	chr4:86762200-86769200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:86762400-86764200	Enhancers	Primary B cells from peripheral blood	blood
7	chr4:86762400-86764200	Enhancers	Fetal Brain Male	brain
8	chr4:86762800-86764200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:86763000-86764000	Enhancers	Primary hematopoietic stem cells	blood
10	chr4:86763000-86764000	Enhancers	Colon Smooth Muscle	Colon
11	chr4:86763200-86764000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr4:86763200-86764000	Enhancers	Brain Cingulate Gyrus	brain
13	chr4:86763200-86764000	Enhancers	Stomach Mucosa	stomach
14	chr4:86763200-86764200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr4:86763200-86764200	Enhancers	Fetal Muscle Leg	muscle
16	chr4:86763200-86764200	Enhancers	Rectal Smooth Muscle	rectum
17	chr4:86763200-86764400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr4:86763200-86764400	Enhancers	Primary B cells from cord blood	blood
19	chr4:86763400-86764000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:86763400-86764000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr4:86763400-86764000	Enhancers	Adipose Nuclei	Adipose
22	chr4:86763400-86764000	Enhancers	Fetal Kidney	kidney
23	chr4:86763400-86764000	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr4:86763400-86764000	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr4:86763400-86764000	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr4:86763400-86764000	Active TSS	Stomach Smooth Muscle	stomach
27	chr4:86763400-86764000	Enhancers	HSMMtube	muscle
28	chr4:86763400-86764200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:86763400-86764200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr4:86763400-86764200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr4:86763400-86764200	Enhancers	Fetal Thymus	thymus
32	chr4:86763400-86764200	Enhancers	Thymus	Thymus
33	chr4:86763400-86764200	Enhancers	HSMM	muscle
34	chr4:86763400-86764200	Enhancers	NH-A	brain
35	chr4:86763400-86764200	Flanking Active TSS	NHDF-Ad	bronchial
36	chr4:86763400-86764200	Enhancers	NHLF	lung
37	chr4:86763400-86764200	Enhancers	Osteobl	bone
38	chr4:86763600-86764000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr4:86763600-86764000	Active TSS	Brain Anterior Caudate	brain
40	chr4:86763600-86764000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr4:86763600-86764200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
42	chr4:86763600-86764200	Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr4:86763800-86764000	Enhancers	Aorta	Aorta
44	chr4:86763800-86764000	Active TSS	Brain Hippocampus Middle	brain
45	chr4:86763800-86764000	Flanking Active TSS	Brain Substantia Nigra	brain
46	chr4:86763800-86764000	Enhancers	Left Ventricle	heart
47	chr4:86763800-86764000	Flanking Active TSS	Psoas Muscle	Psoas
48	chr4:86763800-86764200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:86763800-86764200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:86763800-86764200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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