Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10516758	1.00[ASN][1000 genomes]
rs10516759	1.00[ASN][1000 genomes]
rs10516760	1.00[ASN][1000 genomes]
rs10516761	1.00[ASN][1000 genomes]
rs10516762	1.00[ASN][1000 genomes]
rs13125320	1.00[ASN][1000 genomes]
rs1452681	1.00[ASN][1000 genomes]
rs17395020	1.00[ASN][1000 genomes]
rs17395132	1.00[ASN][1000 genomes]
rs17395223	1.00[ASN][1000 genomes]
rs17399123	1.00[ASN][1000 genomes]
rs17399707	1.00[ASN][1000 genomes]
rs17399908	1.00[ASN][1000 genomes]
rs17400185	1.00[ASN][1000 genomes]
rs2089763	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2601851	0.86[EUR][1000 genomes]
rs2601870	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3114384	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs343847	1.00[ASN][1000 genomes]
rs345328	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs345330	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345340	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs345355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55937611	1.00[ASN][1000 genomes]
rs56305839	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71599426	1.00[ASN][1000 genomes]
rs71599428	1.00[ASN][1000 genomes]
rs745892	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86749400-86787600	Weak transcription	Pancreas	Pancrea
2	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:86760000-86782600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:86764000-86780800	Weak transcription	Adipose Nuclei	Adipose
5	chr4:86770000-86783600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr4:86774400-86780200	Weak transcription	Fetal Brain Male	brain
7	chr4:86774600-86780200	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:86776000-86780200	Weak transcription	HSMM	muscle
9	chr4:86776000-86790400	Weak transcription	Right Atrium	heart
10	chr4:86776200-86780200	Weak transcription	Fetal Heart	heart
11	chr4:86776200-86780200	Weak transcription	Left Ventricle	heart
12	chr4:86776200-86780800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:86776200-86780800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr4:86776200-86780800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:86776200-86780800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:86776400-86780200	Weak transcription	HSMMtube	muscle
17	chr4:86779400-86780800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:86779600-86780000	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr4:86779600-86783200	Enhancers	HUVEC	blood vessel
20	chr4:86779800-86780200	Enhancers	NHDF-Ad	bronchial
21	chr4:86779800-86800200	Weak transcription	Primary B cells from cord blood	blood

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