Variant report

Variant	rs71599428
Chromosome Location	chr4:86718445-86718446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:86717637..86718454-chr4:86964866..86965718,3	MCF-7	breast:
2	chr4:86678145..86678790-chr4:86717860..86718656,2	MCF-7	breast:
3	chr4:86717774..86718537-chr4:86886876..86887427,3	MCF-7	breast:
4	chr4:86717783..86718591-chr4:86885186..86885920,6	MCF-7	breast:
5	chr4:86717537..86719169-chr4:86889518..86891294,13	MCF-7	breast:
6	chr4:86717573..86718676-chr4:86889897..86890637,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10516758	1.00[ASN][1000 genomes]
rs10516759	1.00[ASN][1000 genomes]
rs10516760	1.00[ASN][1000 genomes]
rs10516761	1.00[ASN][1000 genomes]
rs10516762	1.00[ASN][1000 genomes]
rs13125320	1.00[ASN][1000 genomes]
rs1452681	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17395020	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17395132	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17395223	1.00[ASN][1000 genomes]
rs17399123	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17399707	1.00[ASN][1000 genomes]
rs17399908	1.00[ASN][1000 genomes]
rs17400185	1.00[ASN][1000 genomes]
rs2089763	1.00[ASN][1000 genomes]
rs2601870	1.00[ASN][1000 genomes]
rs3114384	1.00[ASN][1000 genomes]
rs343847	1.00[ASN][1000 genomes]
rs345330	1.00[ASN][1000 genomes]
rs345334	1.00[ASN][1000 genomes]
rs345340	1.00[ASN][1000 genomes]
rs345355	1.00[ASN][1000 genomes]
rs345359	1.00[ASN][1000 genomes]
rs55937611	1.00[ASN][1000 genomes]
rs56305839	1.00[ASN][1000 genomes]
rs71599426	1.00[ASN][1000 genomes]
rs745892	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86701000-86728800	Weak transcription	Right Ventricle	heart
2	chr4:86704000-86719800	Enhancers	NHDF-Ad	bronchial
3	chr4:86705800-86719600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:86709000-86727000	Weak transcription	HSMMtube	muscle
5	chr4:86709200-86727000	Weak transcription	HSMM	muscle
6	chr4:86711000-86719800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:86712800-86719400	Weak transcription	Right Atrium	heart
8	chr4:86713200-86726400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr4:86714600-86718800	Enhancers	HUVEC	blood vessel
10	chr4:86715200-86719800	Weak transcription	Fetal Lung	lung
11	chr4:86716000-86720000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:86717800-86718800	Strong transcription	Primary B cells from cord blood	blood
13	chr4:86717800-86719000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:86717800-86719000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:86717800-86719600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr4:86718000-86718800	Active TSS	A549	lung
17	chr4:86718000-86721800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr4:86718200-86718600	Weak transcription	NHLF	lung
19	chr4:86718200-86718600	Enhancers	Osteobl	bone
20	chr4:86718200-86719000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr4:86718200-86719200	Weak transcription	Fetal Stomach	stomach
22	chr4:86718200-86719200	Weak transcription	HMEC	breast
23	chr4:86718200-86719600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:86718200-86719800	Enhancers	Liver	Liver
25	chr4:86718200-86728400	Weak transcription	Left Ventricle	heart
26	chr4:86718200-86733800	Weak transcription	Gastric	stomach
27	chr4:86718400-86718800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:86718400-86719000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:86718400-86719600	Enhancers	Adipose Nuclei	Adipose

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