The 2.0 version of rSNPBase

Variant report

Variant rs34550869
Chromosome Location chr1:211781346-211781347
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211771600-211786200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
2 chr1:211777000-211782600 Weak transcription Hela-S3 cervix
3 chr1:211777000-211786600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr1:211777200-211782600 Weak transcription Osteobl bone
5 chr1:211777200-211786200 Weak transcription NHLF lung
6 chr1:211777400-211784200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr1:211777400-211784200 Weak transcription NHDF-Ad bronchial
8 chr1:211777600-211782600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr1:211778200-211781800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
10 chr1:211778600-211782600 Weak transcription A549 lung
11 chr1:211779000-211781400 Flanking Active TSS Primary neutrophils fromperipheralblood blood
12 chr1:211779200-211784600 Weak transcription Right Atrium heart
13 chr1:211779600-211784600 Weak transcription Lung lung
14 chr1:211780000-211781800 Weak transcription Small Intestine intestine
15 chr1:211780000-211784200 Weak transcription Brain Anterior Caudate brain
16 chr1:211780000-211784200 Weak transcription Brain Cingulate Gyrus brain
17 chr1:211780000-211784800 Weak transcription Esophagus oesophagus
18 chr1:211780400-211782400 Enhancers Fetal Intestine Small intestine
19 chr1:211780400-211783800 Enhancers Spleen Spleen
20 chr1:211780600-211781400 Enhancers Primary Natural Killer cells fromperipheralblood blood
21 chr1:211780600-211781800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
22 chr1:211780600-211782000 Enhancers Sigmoid Colon Sigmoid Colon
23 chr1:211780600-211782600 Enhancers Fetal Intestine Large intestine
24 chr1:211780600-211784000 Enhancers Fetal Adrenal Gland Adrenal Gland
25 chr1:211780800-211781800 Enhancers Primary hematopoietic stem cells short term culture blood
26 chr1:211780800-211782000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr1:211780800-211782400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr1:211780800-211782800 Weak transcription Brain Substantia Nigra brain
29 chr1:211780800-211782800 Weak transcription Fetal Muscle Trunk muscle
30 chr1:211780800-211783200 Enhancers Duodenum Mucosa Duodenum
31 chr1:211780800-211786400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr1:211781000-211781600 Enhancers Primary hematopoietic stem cells blood
33 chr1:211781000-211781600 Enhancers Adipose Nuclei Adipose
34 chr1:211781000-211781600 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr1:211781000-211781800 Enhancers Primary B cells from cord blood blood
36 chr1:211781000-211781800 Enhancers Placenta Placenta
37 chr1:211781000-211781800 Enhancers Stomach Mucosa stomach
38 chr1:211781000-211782000 Enhancers Rectal Mucosa Donor 31 rectum
39 chr1:211781000-211784200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr1:211781000-211784200 Weak transcription Brain Hippocampus Middle brain
41 chr1:211781000-211784200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
42 chr1:211781000-211784600 Weak transcription Rectal Smooth Muscle rectum
43 chr1:211781000-211785400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr1:211781000-211786400 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr1:211781200-211781600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr1:211781200-211782000 Enhancers Colonic Mucosa Colon
47 chr1:211781200-211782200 Enhancers Primary monocytes fromperipheralblood blood
48 chr1:211781200-211782600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr1:211781200-211782600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr1:211781200-211782800 Enhancers HepG2 liver

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Last update: Aug 31, 2015