Variant report

Variant	rs9430077
Chromosome Location	chr1:211788134-211788135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211782443..211790536-chr1:211800686..211806134,8	K562	blood:
2	chr1:211786818..211788395-chr1:211788952..211790929,2	K562	blood:
3	chr1:211777656..211789537-chr1:211792028..211798981,15	K562	blood:
4	chr1:211765108..211767517-chr1:211786699..211788894,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1123527	1.00[ASN][1000 genomes]
rs11799776	1.00[ASN][1000 genomes]
rs12742934	1.00[ASN][1000 genomes]
rs1867376	1.00[ASN][1000 genomes]
rs2027225	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34550869	1.00[ASN][1000 genomes]
rs55960543	1.00[ASN][1000 genomes]
rs56320548	1.00[ASN][1000 genomes]
rs6684175	1.00[ASN][1000 genomes]
rs6694934	1.00[ASN][1000 genomes]
rs726986	1.00[ASN][1000 genomes]
rs745496	1.00[ASN][1000 genomes]
rs7548952	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9429874	1.00[ASN][1000 genomes]
rs9430072	1.00[ASN][1000 genomes]
rs9430074	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211781800-211792000	Weak transcription	Primary B cells from cord blood	blood
2	chr1:211784000-211788400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:211784200-211789200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:211784400-211788400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:211784600-211789400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:211784800-211788400	Enhancers	Placenta	Placenta
7	chr1:211785000-211789400	Weak transcription	Liver	Liver
8	chr1:211785000-211789800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr1:211785200-211788800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:211785200-211789400	Weak transcription	Fetal Lung	lung
11	chr1:211785200-211790000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr1:211785400-211788800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:211785400-211789600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:211785400-211789600	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:211785600-211788400	Enhancers	Duodenum Mucosa	Duodenum
16	chr1:211785600-211794800	Weak transcription	Brain Anterior Caudate	brain
17	chr1:211786000-211788200	Enhancers	Colonic Mucosa	Colon
18	chr1:211786200-211788200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:211786200-211788200	Enhancers	Fetal Muscle Trunk	muscle
20	chr1:211786200-211788600	Enhancers	Fetal Intestine Large	intestine
21	chr1:211786200-211789000	Enhancers	Fetal Intestine Small	intestine
22	chr1:211786400-211788200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:211786400-211788400	Enhancers	Stomach Mucosa	stomach
24	chr1:211786600-211789600	Weak transcription	Brain Substantia Nigra	brain
25	chr1:211786600-211789800	Weak transcription	Ovary	ovary
26	chr1:211786800-211788200	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr1:211786800-211788400	Enhancers	Hela-S3	cervix
28	chr1:211786800-211789400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr1:211786800-211789600	Weak transcription	Aorta	Aorta
30	chr1:211786800-211789600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr1:211786800-211789600	Weak transcription	Esophagus	oesophagus
32	chr1:211786800-211789800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:211787000-211788200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr1:211787000-211788600	Enhancers	Primary hematopoietic stem cells	blood
35	chr1:211787000-211789600	Weak transcription	Left Ventricle	heart
36	chr1:211787000-211789600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr1:211787000-211789600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr1:211787000-211789800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr1:211787000-211796800	Weak transcription	Gastric	stomach
40	chr1:211787400-211788400	Enhancers	Small Intestine	intestine
41	chr1:211787400-211789800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr1:211787400-211790000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr1:211787400-211793400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:211787600-211788200	Enhancers	Right Ventricle	heart
45	chr1:211787600-211789400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr1:211787600-211789400	Weak transcription	Adipose Nuclei	Adipose
47	chr1:211787600-211789400	Weak transcription	Right Atrium	heart
48	chr1:211787600-211789600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:211787600-211789600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr1:211787600-211789800	Weak transcription	Colon Smooth Muscle	Colon

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