Variant report

Variant	rs6694934
Chromosome Location	chr1:211823322-211823323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211820504..211824177-chr1:211831233..211834573,3	MCF-7	breast:
2	chr1:211749200..211754595-chr1:211816014..211824648,8	K562	blood:
3	chr1:211781693..211784457-chr1:211822859..211825401,2	K562	blood:

Variant related genes	Relation type
ENSG00000170385	Chromatin interaction

rs_ID	r²[population]
rs1123527	1.00[ASN][1000 genomes]
rs11799776	1.00[ASN][1000 genomes]
rs12742934	1.00[ASN][1000 genomes]
rs1867376	1.00[ASN][1000 genomes]
rs2027225	1.00[ASN][1000 genomes]
rs34550869	1.00[ASN][1000 genomes]
rs55960543	1.00[ASN][1000 genomes]
rs56320548	1.00[ASN][1000 genomes]
rs6684175	1.00[ASN][1000 genomes]
rs726986	1.00[ASN][1000 genomes]
rs745496	1.00[ASN][1000 genomes]
rs7548952	1.00[ASN][1000 genomes]
rs9429874	1.00[ASN][1000 genomes]
rs9430072	1.00[ASN][1000 genomes]
rs9430074	1.00[ASN][1000 genomes]
rs9430077	1.00[ASN][1000 genomes]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211811400-211829600	Enhancers	Fetal Intestine Small	intestine
2	chr1:211811600-211828200	Enhancers	Fetal Intestine Large	intestine
3	chr1:211817400-211827000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:211817400-211827400	Weak transcription	Fetal Heart	heart
5	chr1:211817600-211826800	Weak transcription	Gastric	stomach
6	chr1:211817600-211827000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:211817600-211830600	Weak transcription	Right Atrium	heart
8	chr1:211818400-211828400	Weak transcription	Adipose Nuclei	Adipose
9	chr1:211819600-211824000	Enhancers	HUVEC	blood vessel
10	chr1:211819600-211824400	Enhancers	Duodenum Mucosa	Duodenum
11	chr1:211820400-211826800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:211820800-211824400	Enhancers	HepG2	liver
13	chr1:211821000-211823400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:211821200-211823600	Enhancers	Placenta	Placenta
15	chr1:211821200-211824000	Enhancers	Stomach Mucosa	stomach
16	chr1:211821200-211824200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:211821400-211824000	Weak transcription	Small Intestine	intestine
18	chr1:211821800-211828400	Weak transcription	Colonic Mucosa	Colon
19	chr1:211822000-211826800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:211822000-211826800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:211822200-211827000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:211822200-211827000	Weak transcription	NHEK	skin
23	chr1:211822200-211828400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr1:211822400-211827000	Weak transcription	K562	blood
25	chr1:211822600-211826800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr1:211822800-211827600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr1:211822800-211828200	Weak transcription	Liver	Liver
28	chr1:211822800-211828200	Weak transcription	Pancreas	Pancrea
29	chr1:211823000-211823400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:211823000-211825600	Genic enhancers	Hela-S3	cervix
31	chr1:211823200-211823400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:211823200-211824000	Weak transcription	NHDF-Ad	bronchial
33	chr1:211823200-211827000	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links