Variant report

Variant	rs9429874
Chromosome Location	chr1:211767738-211767739
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1123527	1.00[ASN][1000 genomes]
rs11582144	0.82[EUR][1000 genomes]
rs11587641	0.82[EUR][1000 genomes]
rs11799776	1.00[ASN][1000 genomes]
rs12742934	1.00[ASN][1000 genomes]
rs1867376	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2027225	1.00[ASN][1000 genomes]
rs34550869	1.00[ASN][1000 genomes]
rs55960543	1.00[ASN][1000 genomes]
rs56320548	1.00[ASN][1000 genomes]
rs6684175	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6694934	1.00[ASN][1000 genomes]
rs676520	1.00[CHB][hapmap]
rs726986	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs745496	1.00[ASN][1000 genomes]
rs7536267	1.00[CHB][hapmap]
rs7548952	1.00[ASN][1000 genomes]
rs7550089	1.00[CHB][hapmap]
rs894856	1.00[CHB][hapmap]
rs9429875	1.00[CHB][hapmap]
rs9430072	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9430073	1.00[CHB][hapmap]
rs9430074	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9430075	1.00[CHB][hapmap]
rs9430077	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv1796467	chr1:211726975-211769893	Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1840920	chr1:211726975-211769893	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211757400-211775200	Weak transcription	Fetal Intestine Small	intestine
2	chr1:211764600-211770600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr1:211764800-211768400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr1:211764800-211768600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr1:211766000-211768600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr1:211766000-211769400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:211766000-211770400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:211766000-211772200	Weak transcription	Placenta	Placenta
9	chr1:211766200-211770800	Weak transcription	NHLF	lung
10	chr1:211766400-211770600	Weak transcription	NHDF-Ad	bronchial
11	chr1:211766600-211769800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:211766800-211770000	Weak transcription	Osteobl	bone
13	chr1:211766800-211771400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:211767600-211767800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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