The 2.0 version of rSNPBase

Variant report

Variant rs34554235
Chromosome Location chr5:58315997-58315998
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58279400-58317600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr5:58279600-58330400 Weak transcription Fetal Stomach stomach
3 chr5:58281800-58321600 Weak transcription Osteobl bone
4 chr5:58286200-58316200 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr5:58286200-58330400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
6 chr5:58286200-58330600 Weak transcription Thymus Thymus
7 chr5:58288800-58330600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr5:58296000-58321600 Weak transcription Aorta Aorta
9 chr5:58298600-58317800 Weak transcription Stomach Smooth Muscle stomach
10 chr5:58299600-58316600 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr5:58299800-58318000 Weak transcription Right Ventricle heart
12 chr5:58302400-58316200 Weak transcription Placenta Amnion Placenta Amnion
13 chr5:58302400-58321600 Weak transcription Gastric stomach
14 chr5:58303600-58317800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
15 chr5:58304000-58316800 Weak transcription Rectal Mucosa Donor 29 rectum
16 chr5:58304000-58316800 Weak transcription Rectal Smooth Muscle rectum
17 chr5:58307000-58322000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr5:58310800-58323400 Weak transcription Fetal Muscle Trunk muscle
19 chr5:58312400-58316000 Strong transcription HSMM muscle
20 chr5:58312600-58316600 Weak transcription Duodenum Mucosa Duodenum
21 chr5:58313000-58317600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr5:58313000-58333400 Weak transcription Lung lung
23 chr5:58313200-58316600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr5:58313200-58316800 Weak transcription Pancreatic Islets Pancreatic Islet
25 chr5:58313200-58325600 Weak transcription Fetal Lung lung
26 chr5:58313200-58330200 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr5:58313400-58316400 Weak transcription Fetal Adrenal Gland Adrenal Gland
28 chr5:58313800-58317800 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr5:58314000-58316600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr5:58314000-58316800 Weak transcription Primary hematopoietic stem cells short term culture blood
31 chr5:58314000-58318600 Strong transcription Fetal Thymus thymus
32 chr5:58314200-58316200 Weak transcription Primary T cells fromperipheralblood blood
33 chr5:58314200-58316600 Weak transcription Primary T helper naive cells fromperipheralblood blood
34 chr5:58314200-58318000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr5:58314200-58318400 Enhancers Fetal Heart heart
36 chr5:58314400-58323200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr5:58314600-58316600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
38 chr5:58314600-58321600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr5:58314800-58318600 Enhancers Skeletal Muscle Female skeletal muscle
40 chr5:58314800-58323000 Weak transcription Primary hematopoietic stem cells blood
41 chr5:58315000-58316000 Enhancers Skeletal Muscle Male skeletal muscle
42 chr5:58315000-58325800 Weak transcription Fetal Muscle Leg muscle
43 chr5:58315200-58318600 Genic enhancers Primary T cells from cord blood blood
44 chr5:58315400-58316600 Genic enhancers A549 lung
45 chr5:58315400-58317800 Enhancers Primary T helper 17 cells PMA-I stimulated --
46 chr5:58315400-58318600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
47 chr5:58315600-58316000 Enhancers Colon Smooth Muscle Colon
48 chr5:58315600-58316600 Weak transcription Psoas Muscle Psoas
49 chr5:58315600-58316600 Weak transcription Hela-S3 cervix
50 chr5:58315600-58316800 Weak transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015