Variant report
| Variant | rs34642130 |
|---|---|
| Chromosome Location | chr10:110385697-110385698 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:110379538..110381981-chr10:110384603..110386733,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11592603 | 0.97[EUR][1000 genomes] |
| rs11598756 | 0.98[EUR][1000 genomes] |
| rs11599175 | 0.96[EUR][1000 genomes] |
| rs11599195 | 0.97[EUR][1000 genomes] |
| rs11599693 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11599695 | 0.97[EUR][1000 genomes] |
| rs11599719 | 0.97[EUR][1000 genomes] |
| rs12769194 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12777014 | 0.97[EUR][1000 genomes] |
| rs12781669 | 0.97[EUR][1000 genomes] |
| rs17124878 | 0.98[EUR][1000 genomes] |
| rs2482579 | 0.98[EUR][1000 genomes] |
| rs34256039 | 0.97[EUR][1000 genomes] |
| rs35165947 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs35284210 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs35573175 | 0.92[EUR][1000 genomes] |
| rs36096694 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4537698 | 0.97[EUR][1000 genomes] |
| rs7091879 | 0.98[EUR][1000 genomes] |
| rs7095639 | 0.98[EUR][1000 genomes] |
| rs71479218 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs71479221 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831983 | chr10:110267919-110467318 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1050244 | chr10:110279647-110779693 | Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | esv2761624 | chr10:110303323-110411575 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv895990 | chr10:110354980-110452911 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv975821 | chr10:110362115-110404095 | Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 6 | nsv825562 | chr10:110375607-110430501 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:110385200-110389200 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
