Variant report

Variant	rs34737835
Chromosome Location	chr15:49897614-49897615
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49895608..49898608-chr15:49909144..49913882,6	MCF-7	breast:
2	chr15:49894998..49898668-chr15:49898924..49901371,4	MCF-7	breast:
3	chr15:49896151..49901390-chr15:49910605..49913759,5	K562	blood:

Variant related genes	Relation type
ENSG00000104047	Chromatin interaction
ENSG00000166262	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11070712	1.00[AFR][1000 genomes]
rs12324090	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12592839	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12594926	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12900911	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901023	1.00[AFR][1000 genomes]
rs12901631	1.00[AFR][1000 genomes]
rs12906292	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12907986	1.00[AFR][1000 genomes]
rs12908295	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12909835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12913379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12913571	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12913643	1.00[AFR][1000 genomes]
rs12913706	1.00[AFR][1000 genomes]
rs16962583	1.00[AFR][1000 genomes]
rs16962673	1.00[AFR][1000 genomes]
rs2007443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34134305	1.00[AFR][1000 genomes]
rs34212162	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34291739	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34377746	1.00[AFR][1000 genomes]
rs34461215	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34492504	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34531968	1.00[AFR][1000 genomes]
rs34605270	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34918968	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34951376	1.00[AFR][1000 genomes]
rs34982209	1.00[AFR][1000 genomes]
rs35091054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35112372	1.00[AFR][1000 genomes]
rs35145376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35224895	1.00[AFR][1000 genomes]
rs35240887	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35543719	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35563735	1.00[AFR][1000 genomes]
rs35683135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35686890	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35699093	1.00[AFR][1000 genomes]
rs35799750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36048625	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36106985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36114417	1.00[AFR][1000 genomes]
rs4304966	1.00[AFR][1000 genomes]
rs4407014	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55662230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55691379	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56053668	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56248339	1.00[AFR][1000 genomes]
rs66535408	1.00[AFR][1000 genomes]
rs67031905	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71467682	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs71467683	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71467692	1.00[AFR][1000 genomes]
rs7175275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729117	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72729172	1.00[AFR][1000 genomes]
rs8025420	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8029303	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8030269	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9972602	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569392	chr15:49789413-49926300	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49893200-49906800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:49894600-49902800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:49895600-49898000	Weak transcription	Right Ventricle	heart
4	chr15:49895600-49911400	Weak transcription	Psoas Muscle	Psoas
5	chr15:49895800-49907000	Weak transcription	HSMM	muscle
6	chr15:49896000-49912200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:49896200-49906600	Weak transcription	Fetal Lung	lung
8	chr15:49896400-49901000	Weak transcription	Gastric	stomach
9	chr15:49896600-49906200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr15:49896600-49912000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:49896800-49907000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr15:49896800-49912000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:49897000-49911400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:49897200-49897800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr15:49897200-49897800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:49897200-49897800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
17	chr15:49897200-49898200	ZNF genes & repeats	Fetal Intestine Small	intestine
18	chr15:49897200-49898200	ZNF genes & repeats	Thymus	Thymus
19	chr15:49897200-49907000	Weak transcription	Liver	Liver
20	chr15:49897400-49897800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
21	chr15:49897400-49897800	ZNF genes & repeats	Left Ventricle	heart
22	chr15:49897400-49898200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:49897400-49898200	ZNF genes & repeats	Fetal Muscle Leg	muscle
24	chr15:49897400-49898200	ZNF genes & repeats	Fetal Stomach	stomach
25	chr15:49897400-49898200	ZNF genes & repeats	Pancreas	Pancrea
26	chr15:49897400-49898400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:49897400-49898600	Strong transcription	Primary T cells from cord blood	blood
28	chr15:49897400-49898800	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr15:49897400-49899800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:49897600-49898000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:49897600-49898200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
32	chr15:49897600-49898200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr15:49897600-49898200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:49897600-49898200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:49897600-49898200	ZNF genes & repeats	Aorta	Aorta
36	chr15:49897600-49898200	ZNF genes & repeats	Esophagus	oesophagus
37	chr15:49897600-49898200	ZNF genes & repeats	Fetal Intestine Large	intestine
38	chr15:49897600-49898200	ZNF genes & repeats	Lung	lung
39	chr15:49897600-49898400	Strong transcription	Brain Hippocampus Middle	brain
40	chr15:49897600-49898600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:49897600-49899000	Strong transcription	Ovary	ovary
42	chr15:49897600-49899000	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr15:49897600-49906200	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:49897600-49906400	Weak transcription	Primary B cells from cord blood	blood

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