Variant report

Variant	rs4304966
Chromosome Location	chr15:49885137-49885138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr15:49884870-49885205	HepG2	liver:	n/a	n/a
2	SP1	chr15:49885038-49885534	HepG2	liver:	n/a	n/a
3	YY1	chr15:49885038-49885161	K562	blood:	n/a	n/a
4	POLR2A	chr15:49884990-49885396	HepG2	liver:	n/a	n/a
5	FOXA1	chr15:49884882-49885356	HepG2	liver:	n/a	n/a
6	POLR2A	chr15:49885137-49885147	MCF-7	breast:	n/a	n/a
7	POLR2A	chr15:49885086-49885457	HepG2	liver:	n/a	n/a
8	POLR2A	chr15:49884962-49885363	HepG2	liver:	n/a	n/a
9	YY1	chr15:49884947-49885589	HepG2	liver:	n/a	n/a
10	FOXA2	chr15:49884918-49885225	HepG2	liver:	n/a	n/a
11	HEY1	chr15:49885128-49885393	HepG2	liver:	n/a	n/a
12	FOXA1	chr15:49884907-49885210	HepG2	liver:	n/a	n/a
13	YY1	chr15:49884968-49885229	HepG2	liver:	n/a	n/a
14	POLR2A	chr15:49885114-49885430	MCF-7	breast:	n/a	n/a
15	FOXA1	chr15:49884939-49885210	HepG2	liver:	n/a	n/a
16	POLR2A	chr15:49885067-49885414	HepG2	liver:	n/a	n/a
17	HEY1	chr15:49885018-49885369	HepG2	liver:	n/a	n/a
18	FOXA2	chr15:49884914-49885223	A549	lung:	n/a	n/a

Variant related genes	Relation type
FAM227B	TF binding region

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10519237	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11070712	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12592126	1.00[AFR][1000 genomes]
rs12901023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12901631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12902098	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12904876	0.91[EUR][1000 genomes]
rs12906292	1.00[AFR][1000 genomes]
rs12906970	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12907986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12908295	1.00[AFR][1000 genomes]
rs12909835	1.00[AFR][1000 genomes]
rs12910139	0.91[EUR][1000 genomes]
rs12913210	1.00[AFR][1000 genomes]
rs12913379	1.00[AFR][1000 genomes]
rs12913643	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12913706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1507617	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16962583	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16962673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16962733	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16962755	0.91[EUR][1000 genomes]
rs1843147	0.80[EUR][1000 genomes]
rs1911617	0.89[ASN][1000 genomes]
rs2007443	1.00[AFR][1000 genomes]
rs2202711	0.90[ASN][1000 genomes]
rs2202712	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2202713	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34134305	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34200965	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34377746	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34443321	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34531968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34737835	1.00[AFR][1000 genomes]
rs34764936	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34779255	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34798694	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34918968	1.00[AFR][1000 genomes]
rs34951376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34980263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34982209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35091054	1.00[AFR][1000 genomes]
rs35112372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35145376	1.00[AFR][1000 genomes]
rs35224895	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35240887	1.00[AFR][1000 genomes]
rs35451130	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35563735	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35683135	1.00[AFR][1000 genomes]
rs35699093	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35799750	1.00[AFR][1000 genomes]
rs36106985	1.00[AFR][1000 genomes]
rs36114417	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4407014	1.00[AFR][1000 genomes]
rs55662230	1.00[AFR][1000 genomes]
rs56248339	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66535408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67031905	1.00[AFR][1000 genomes]
rs67196042	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71467682	1.00[AFR][1000 genomes]
rs71467683	1.00[AFR][1000 genomes]
rs71467692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7175275	1.00[AFR][1000 genomes]
rs72729117	1.00[AFR][1000 genomes]
rs72729172	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72731149	0.87[ASN][1000 genomes]
rs72731157	0.80[EUR][1000 genomes]
rs731052	0.89[ASN][1000 genomes]
rs906420	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569392	chr15:49789413-49926300	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1040578	chr15:49841444-49890789	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49856200-49897400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:49866800-49897600	Weak transcription	Ovary	ovary
3	chr15:49868800-49892400	Weak transcription	Left Ventricle	heart
4	chr15:49879600-49887600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:49885000-49885400	ZNF genes & repeats	Spleen	Spleen
6	chr15:49885000-49885600	Active TSS	HepG2	liver

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