Variant report

Variant	rs34443321
Chromosome Location	chr15:49970839-49970840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49968518..49970892-chr15:49980860..49984000,3	MCF-7	breast:
2	chr15:49959156..49961709-chr15:49969639..49971323,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10519237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11070712	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12901023	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12901631	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12902098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12904876	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12906970	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12907986	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12910139	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12913643	0.83[EUR][1000 genomes]
rs12913706	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1507617	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16962583	0.83[EUR][1000 genomes]
rs16962673	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16962733	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16962755	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1843147	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1911617	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2202711	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2202712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2202713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34134305	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34200965	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34377746	0.83[EUR][1000 genomes]
rs34531968	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34764936	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34779255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34798694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34951376	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34980263	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34982209	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35112372	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35224895	0.83[EUR][1000 genomes]
rs35451130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35563735	0.87[EUR][1000 genomes]
rs35699093	0.83[EUR][1000 genomes]
rs36114417	0.83[EUR][1000 genomes]
rs4304966	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56248339	0.83[EUR][1000 genomes]
rs66535408	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67196042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67487456	0.82[EUR][1000 genomes]
rs71467692	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72729172	0.83[EUR][1000 genomes]
rs72731149	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72731157	0.88[EUR][1000 genomes]
rs731052	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs906420	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49966800-49987400	Weak transcription	NHLF	lung
2	chr15:49968200-49971000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr15:49968600-49971000	Weak transcription	NHDF-Ad	bronchial
4	chr15:49970000-49972000	Enhancers	Ovary	ovary
5	chr15:49970800-49972000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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