Variant report

Variant	rs12910139
Chromosome Location	chr15:49991604-49991605
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10519237	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11070712	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12901023	0.91[EUR][1000 genomes]
rs12901631	0.91[EUR][1000 genomes]
rs12902098	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12904876	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12906970	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12907986	0.91[EUR][1000 genomes]
rs12913643	0.83[EUR][1000 genomes]
rs12913706	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1507617	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16962583	0.83[EUR][1000 genomes]
rs16962673	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16962733	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16962755	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1843147	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1911617	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2202711	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2202712	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2202713	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34134305	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34200965	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34443321	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34531968	0.91[EUR][1000 genomes]
rs34764936	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34779255	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34798694	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34951376	0.91[EUR][1000 genomes]
rs34980263	0.91[EUR][1000 genomes]
rs34982209	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35112372	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35224895	0.83[EUR][1000 genomes]
rs35451130	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35563735	0.87[EUR][1000 genomes]
rs35699093	0.83[EUR][1000 genomes]
rs36114417	0.83[EUR][1000 genomes]
rs4304966	0.91[EUR][1000 genomes]
rs56248339	0.83[EUR][1000 genomes]
rs66535408	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67196042	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67487456	0.82[EUR][1000 genomes]
rs71467692	0.91[EUR][1000 genomes]
rs72729172	0.83[EUR][1000 genomes]
rs72731149	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72731157	0.88[EUR][1000 genomes]
rs731052	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs906420	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv569393	chr15:49977687-50012256	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49990600-49991800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:49991400-49992000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:49991600-49992000	Enhancers	Ovary	ovary

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