Variant report

Variant	rs67196042
Chromosome Location	chr15:49984462-49984463
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49983107..49986067-chr15:49987046..49989205,2	MCF-7	breast:
2	chr15:49981865..49984668-chr15:49985096..49986866,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10519237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11070712	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12901023	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12901631	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12902098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12904876	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906970	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12907986	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12910139	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12913643	0.83[EUR][1000 genomes]
rs12913706	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1507617	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16962583	0.83[EUR][1000 genomes]
rs16962673	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16962733	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16962755	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1843147	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1911617	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2202711	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2202712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2202713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34134305	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34200965	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34443321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34531968	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34764936	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34779255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34798694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34951376	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34980263	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34982209	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35112372	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35224895	0.83[EUR][1000 genomes]
rs35451130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35563735	0.87[EUR][1000 genomes]
rs35699093	0.83[EUR][1000 genomes]
rs36114417	0.83[EUR][1000 genomes]
rs4304966	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56248339	0.83[EUR][1000 genomes]
rs66535408	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67487456	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71467692	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72729172	0.83[EUR][1000 genomes]
rs72731149	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72731157	0.88[EUR][1000 genomes]
rs731052	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs906420	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv569393	chr15:49977687-50012256	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49966800-49987400	Weak transcription	NHLF	lung
2	chr15:49980400-49984800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:49984200-49986400	Enhancers	NHDF-Ad	bronchial
4	chr15:49984200-49990200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:49984400-49986000	Enhancers	Brain Hippocampus Middle	brain
6	chr15:49984400-49986400	Enhancers	Osteobl	bone
7	chr15:49984400-49987600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:49984400-49989800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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