Variant report

Variant	rs1843147
Chromosome Location	chr15:50003084-50003085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49912918..49914699-chr15:50001651..50003780,2	MCF-7	breast:
2	chr15:50002798..50005216-chr15:50011124..50013123,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166262	Chromatin interaction
ENSG00000104047	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10519237	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[EUR][1000 genomes]
rs11070712	0.88[CEU][hapmap];0.94[CHB][hapmap];0.86[EUR][1000 genomes]
rs12901023	0.80[EUR][1000 genomes]
rs12901631	0.80[EUR][1000 genomes]
rs12902098	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[EUR][1000 genomes]
rs12904876	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12906970	0.88[CEU][hapmap];0.94[CHB][hapmap];0.84[EUR][1000 genomes]
rs12907986	0.87[CEU][hapmap];0.94[CHB][hapmap];0.80[EUR][1000 genomes]
rs12910139	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12913706	0.88[CEU][hapmap];0.93[CHB][hapmap];0.80[EUR][1000 genomes]
rs1507617	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1588129	0.88[CEU][hapmap];0.94[CHB][hapmap]
rs16962583	0.88[CEU][hapmap];0.94[CHB][hapmap]
rs16962673	0.94[CHB][hapmap];0.80[EUR][1000 genomes]
rs16962733	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16962755	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1911617	0.94[CHB][hapmap]
rs2202711	0.94[CHB][hapmap]
rs2202712	0.88[CEU][hapmap];0.94[CHB][hapmap];0.88[EUR][1000 genomes]
rs2202713	0.88[EUR][1000 genomes]
rs34134305	0.84[EUR][1000 genomes]
rs34443321	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34531968	0.80[EUR][1000 genomes]
rs34764936	0.88[EUR][1000 genomes]
rs34779255	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34798694	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34951376	0.80[EUR][1000 genomes]
rs34980263	0.80[EUR][1000 genomes]
rs34982209	0.80[EUR][1000 genomes]
rs35112372	0.80[EUR][1000 genomes]
rs35451130	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4304966	0.80[EUR][1000 genomes]
rs66535408	0.80[EUR][1000 genomes]
rs67196042	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67487456	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71467692	0.80[EUR][1000 genomes]
rs72731157	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs731052	0.94[CHB][hapmap]
rs906420	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv569393	chr15:49977687-50012256	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50001600-50003200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
2	chr15:50002400-50004000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
3	chr15:50002600-50003200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:50002600-50003200	ZNF genes & repeats	Liver	Liver
5	chr15:50002600-50003200	ZNF genes & repeats	Pancreas	Pancrea
6	chr15:50002600-50003800	ZNF genes & repeats	Aorta	Aorta

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